PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.005G136000.2
Common NameB456_005G136000, LOC105794130
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 185aa    MW: 20693 Da    PI: 10.1694
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.005G136000.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.68e-121667555
                        HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH  5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                         +++E++RR+++++  ++L +l+P+ ++k++++  s  + L +A  YIk+L+
  Gorai.005G136000.2 16 RKAIEKKRRNDMKNLCSKLASLIPHhNFKPSKEIASQQDQLDLAAVYIKHLR 67
                        579**********************999999999****************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.4171166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.3E-101571IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.17E-51671No hitNo description
SuperFamilySSF474591.44E-101686IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-81766IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.4E-51772IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MKKNSCGGQS NSKPDRKAIE KKRRNDMKNL CSKLASLIPH HNFKPSKEIA SQQDQLDLAA  60
VYIKHLRERI EKLKRLKEEA MRSMEASSSM MERTASVGLT SPVLELRDLG SSIELVLITG  120
LNKNFMLYEV ISIFEQEGAE VVSASFSTVG GKIFHTLHAQ AKLSRVGVET TRVCQRLQEL  180
IKSY*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4600320.0KF460032.1 Gossypium hirsutum cultivar Sumian No.22 bHLH transcription factor (bHLH130) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012478588.11e-134PREDICTED: uncharacterized protein LOC105794130
RefseqXP_012478589.11e-134PREDICTED: uncharacterized protein LOC105794130
RefseqXP_012478590.11e-134PREDICTED: uncharacterized protein LOC105794130
TrEMBLA0A0D2REL31e-134A0A0D2REL3_G
STRINGPOPTR_0015s08580.14e-79(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.16e-22bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]